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Long-term series of annual and seasonal water flow and major ions in the Pechora River were analyzed. Long-term phases of increased and decreased water flow were identified, ranging in duration from 11 to 49 years, and the major characteristics of these phases were determined. Changes in the sequence and boundaries of contrast phases in the annual and snowmelt spring–summer flood runoff were found to coincide. The difference between the mean seasonal water runoff during the phases of increased and decreased flow varied from 12 to 41%. The ion flow values of contrast phases typically differed by 9 to 36%, which is less than for water flow. This is due to the inverse dependence between ion concentrations and water discharge. Such peculiar negative feedback stabilizes the rates of chemical denudation in the river catchments to some extent and, thus, the discharge of major ions into seas, even during significant variations in water.